Dernière mise à jour : octobre 2024
Jouniaux, A., Arredondo, A., Boitard, S., Chikhi,
L., Mazet, O. (2024). Extending the IICR to complex non-stationary
structured models. Soumis.
https://www.biorxiv.org/content/10.1101/2024.10.21.619462v1
Chikhi, L., Rodriguez,
W., Paris, C., Ha-Shan, M., Jouniaux, A., Arredondo,
A., Noûs, C., Grusea, S., Corujo, J., Lourenço, I., Boitard,
S., Mazet, O. (2024). Extending the
IICR to multiple genomes helps clarify some limitations of demographic
inferential methods. Soumis.
https://www.biorxiv.org/content/10.1101/2024.08.16.608273v1
Steux, C., Couloigner, C., Arredondo, A.,
Rodriguez, W., Mazet, O., Tournebize, R., Chikhi, L. (2024). On the demographic history of chimpanzees and some consequences of
integrating population structure in chimpanzees and other great apes. En révision.
https://www.biorxiv.org/content/10.1101/2024.06.14.599042v1
Arredondo, A., Corujo, J., Noûs, C., Boitard,
S., Chikhi, L., Mazet,
O. (2024). Exact calculation of the expected SFS in structured
populations. En revision.
https://biorxiv.org/cgi/content/short/2023.05.10.540112v1
Mazet, O., Noûs, C. (2023).
Population genetics: coalescence rate and demographic parameters inference, PCI Math. & Comp. Bio., Peer
Community Journal, Volume 3, article n° e53.
https://peercommunityjournal.org/articles/10.24072/pcjournal.285/
Boitard, S., Arredondo, A., Chikhi, L., Mazet, O (2022). Heterogeneity in effective size across the genome: effects
on the Inverse Instantaneous Coalescence Rate (IICR) and implications for
demographic inference under linked selection, Genetics, vol. 220,
issue 3, march 2022, iyac008, https://doi.org/10.1093/genetics/iyac008
Teixeira, H., Salmona, J., Arredondo, A.,
Mourato, B., Manzi, S., Rakotondravony, R., Mazet, O., Chikhi,
L., Metzger, J., Radespiel, U. (2021). Impact of model assumptions on demographic inferences – the
case study of two sympatric mouse lemurs in northwestern Madagascar. BMC Ecol Evo 21, 197 (2021). https://doi.org/10.1186/s12862-021-01929-z
Arredondo, A., Mourato, B., Nguyen, K., Boitard,
S., Rodriguez, W., Noûs, C., Mazet, O., Chikhi, L. (2021). Inferring number of populations
and changes in connectivity under the n-island model. Heredity (2021). https://www.nature.com/articles/s41437-021-00426-9
Grusea, S., Rodríguez, W., Pinchon,
D., Chikhi, L., Boitard,
S., & Mazet, O. (2019). Coalescence times for three
genes provide sufficient information to distinguish population structure from
population size changes. J. Math. Biol. 78, 189–224 (2019).
https://doi.org/10.1007/s00285-018-1272-4
Rodríguez, W., Mazet, O., Grusea, S., Arredondo, A., Corujo,
J., Boitard, S., & Chikhi,
L. (2018). The IICR and the
non-stationary structured coalescent: demographic inference with arbitrary
changes in population structure. Heredity, vol. 121, pp 663–678 (2018).
https://www.nature.com/articles/s41437-018-0148-0
Chikhi, L., Rodríguez, W., Grusea,
S., Santos, P., Boitard, S., & Mazet, O. (2018). The IICR (inverse instantaneous coalescence rate) as a
summary of genomic diversity: insights into demographic inference and model
choice. Heredity, vol. 120, pp 13-24.
https://www.nature.com/articles/s41437-017-0005-6
Mazet, O., Rodriguez, W., Grusea, S., Boitard, S., & Chikhi,
L. (2016). On the importance of being structured: instantaneous coalescence rates
and human evolution—lessons for ancestral population size inference?.
Heredity, vol. 116 (4),
pp 362-371.
https://www.nature.com/articles/hdy2015104
Mazet, O., Rodríguez, W., & Chikhi, L. (2015).
Demographic inference using genetic data from a single individual: Separating
population size variation from population structure. Theoretical population
biology, 104, 46-58. https://doi.org/10.1016/j.tpb.2015.06.003
Knibbe, C.,
Coulon, A., Mazet, O., Fayard, J.
M., & Beslon, G. (2007). A long-term evolutionary pressure on the amount of noncoding
DNA. Molecular biology and evolution, 24(10), 2344-2353. https://academic.oup.com/mbe/article/24/10/2344/1074262
Knibbe, C., Mazet, O., Chaudier,
F., Fayard, J. M., & Beslon, G. (2007). Evolutionary coupling between
the deleteriousness of gene mutations and the amount of non-coding sequences. Journal
of Theoretical Biology, 244(4), 621-630.
https://www.sciencedirect.com/science/article/pii/S0022519306004061
Coulon, A.,
Soula, H., Mazet, O., Gandrillon, O., & Beslon, G. (2007). Modélisation cellulaire pour l'émergence de structures
multiprotéiques auto-organisées. Technique et Science
Informatiques, 26(1-2), 123-148.
Soula, H.,
Beslon, G., & Mazet, O. (2006). Spontaneous
dynamics of asymmetric random recurrent spiking neural networks. Neural Computation, 18(1), 60-79.
https://direct.mit.edu/neco/article-abstract/18/1/60/7018
Cessac, B., Mazet, O., Samuelides,
M., & Soula, H. (2005). Mean field theory for random recurrent spiking neural networks. In NOLTA
(Vol. 5, pp. 18-21).
https://www.academia.edu/download/39235008/09e4150c231ae8e132000000.pdf
Alòs, E., Mazet, O., & Nualart,
D. (2001). Stochastic calculus with
respect to Gaussian processes. Annals of probability, 766-801. https://projecteuclid.org/journals/annals-of-probability/volume-29/issue-2/Stochastic-Calculus-with-Respect-to-Gaussian-Processes/10.1214/aop/1008956692.short
Alòs, E., Mazet, O., & Nualart,
D. (2000). Stochastic calculus with
respect to fractional Brownian motion with Hurst parameter lesser than 1/2. Stochastic
processes and their applications, 86(1), 121-139.
https://www.sciencedirect.com/science/article/pii/S0304414999000897
Bakry, D., & Mazet, O. (2003). Characterization of Markov semigroups on ℝ associated to some families
of orthogonal polynomials. In Séminaire de Probabilités XXXVII (pp. 60-80). Springer Berlin
Heidelberg. https://link.springer.com/chapter/10.1007/978-3-540-40004-2_2
Mazet, O. (2002). A characterization of
Markov property for semigroups with invariant measure. Potential Analysis,
16(3), 279-287.
https://link.springer.com/article/10.1023/A:1014027914329
Mazet, O. (1998). Semigroupes de Markov associés à une famille de
polynômes orthogonaux (Doctoral dissertation).
Mazet, O. (1997).
Classification des Semi-Groupes de diffusion sur IR associés à une famille de
polynômes orthogonaux. In Séminaire de Probabilités XXXI (pp. 40-53).
Springer Berlin Heidelberg. http://www.numdam.org/item/SPS_1997__31__40_0.pdf
Mazet,
O.
(1996). Une caractérisation des
générateurs de semi-groupes markoviens. Comptes rendus de l'Académie des
sciences. Série 1, Mathématique, 322(2), 165-168.