Dernière mise à jour : juin 2024
Steux, C.,
Couloigner, C., Arredondo, A., Rodriguez, W., Mazet, O., Tournebize, R., Chikhi, L. (2024). On the demographic history of chimpanzees and some
consequences of integrating population structure in chimpanzees and other great
apes. Soumis.
https://www.biorxiv.org/content/10.1101/2024.06.14.599042v1
Arredondo, A.,
Corujo, J., Noûs, C., Boitard, S., Chikhi, L., Mazet, O. (2024). Exact
calculation of the expected SFS in structured populations. En révision.
https://biorxiv.org/cgi/content/short/2023.05.10.540112v1
Mazet, O., Noûs, C. (2023). Population genetics: coalescence rate and demographic
parameters inference, PCI Math. &
Comp. Bio., Peer Community Journal, Volume 3, article n° e53.
https://peercommunityjournal.org/articles/10.24072/pcjournal.285/
Boitard, S.,
Arredondo, A., Chikhi, L., Mazet, O (2022). Heterogeneity in effective size
across the genome: effects on the Inverse Instantaneous Coalescence Rate (IICR)
and implications for demographic inference under linked selection, Genetics,
vol. 220, issue 3, march 2022, iyac008, https://doi.org/10.1093/genetics/iyac008
Teixeira, H., Salmona, J., Arredondo, A., Mourato, B.,
Manzi, S., Rakotondravony, R., Mazet, O.,
Chikhi, L., Metzger, J., Radespiel, U. (2021).
Impact of model assumptions on demographic inferences – the case study of two
sympatric mouse lemurs in northwestern Madagascar. BMC Ecol Evo
21, 197 (2021). https://doi.org/10.1186/s12862-021-01929-z
Arredondo, A., Mourato, B., Nguyen, K., Boitard, S.,
Rodriguez, W., Noûs, C., Mazet, O.,
Chikhi, L. (2021). Inferring number
of populations and changes in connectivity under the n-island model. Heredity (2021). https://www.nature.com/articles/s41437-021-00426-9
Grusea, S.,
Rodríguez, W., Pinchon, D., Chikhi, L., Boitard, S., & Mazet, O. (2019).
Coalescence times for three genes provide sufficient information to distinguish
population structure from population size changes. J.
Math. Biol. 78, 189–224 (2019).
https://doi.org/10.1007/s00285-018-1272-4
Rodríguez, W., Mazet,
O., Grusea, S., Arredondo, A., Corujo, J., Boitard, S., & Chikhi, L. (2018). The IICR and the non-stationary
structured coalescent: demographic inference with arbitrary changes in
population structure. Heredity, vol. 121, pp 663–678 (2018).
https://www.nature.com/articles/s41437-018-0148-0
Chikhi,
L., Rodríguez, W., Grusea, S., Santos, P., Boitard, S., & Mazet, O. (2018). The IICR (inverse
instantaneous coalescence rate) as a summary of genomic diversity: insights
into demographic inference and model choice. Heredity, vol. 120, pp
13-24.
https://www.nature.com/articles/s41437-017-0005-6
Mazet, O., Rodriguez, W.,
Grusea, S., Boitard, S., & Chikhi, L. (2016).
On the importance of being structured: instantaneous
coalescence rates and human evolution—lessons for ancestral population size
inference?. Heredity, vol. 116 (4),
pp 362-371.
https://www.nature.com/articles/hdy2015104
Mazet, O.,
Rodríguez, W., & Chikhi, L. (2015).
Demographic inference using genetic data from a single individual: Separating
population size variation from population structure. Theoretical population
biology, 104, 46-58. https://doi.org/10.1016/j.tpb.2015.06.003
Knibbe, C., Coulon, A., Mazet, O., Fayard, J. M., & Beslon,
G. (2007). A long-term evolutionary
pressure on the amount of noncoding DNA. Molecular biology and evolution,
24(10), 2344-2353. https://academic.oup.com/mbe/article/24/10/2344/1074262
Knibbe, C., Mazet, O., Chaudier, F., Fayard, J. M.,
& Beslon, G. (2007).
Evolutionary coupling between the deleteriousness of gene mutations and the
amount of non-coding sequences. Journal of Theoretical Biology, 244(4),
621-630.
https://www.sciencedirect.com/science/article/pii/S0022519306004061
Coulon, A.,
Soula, H., Mazet, O., Gandrillon,
O., & Beslon, G. (2007).
Modélisation cellulaire pour l'émergence de structures multiprotéiques
auto-organisées. Technique et Science Informatiques, 26(1-2),
123-148.
Soula, H.,
Beslon, G., & Mazet, O. (2006). Spontaneous
dynamics of asymmetric random recurrent spiking neural networks. Neural Computation, 18(1), 60-79.
https://direct.mit.edu/neco/article-abstract/18/1/60/7018
Cessac, B., Mazet, O., Samuelides, M., & Soula,
H. (2005). Mean field
theory for random recurrent spiking neural networks. In NOLTA (Vol. 5,
pp. 18-21).
https://www.academia.edu/download/39235008/09e4150c231ae8e132000000.pdf
Alòs, E., Mazet, O., & Nualart, D. (2001).
Stochastic calculus with respect to Gaussian processes. Annals of
probability, 766-801. https://projecteuclid.org/journals/annals-of-probability/volume-29/issue-2/Stochastic-Calculus-with-Respect-to-Gaussian-Processes/10.1214/aop/1008956692.short
Alòs, E., Mazet, O., & Nualart, D. (2000).
Stochastic calculus with respect to fractional Brownian motion with Hurst
parameter lesser than 1/2. Stochastic processes and their applications, 86(1),
121-139.
https://www.sciencedirect.com/science/article/pii/S0304414999000897
Bakry, D., & Mazet, O. (2003). Characterization of Markov semigroups on ℝ associated to some families
of orthogonal polynomials. In Séminaire de Probabilités XXXVII (pp.
60-80). Springer Berlin Heidelberg. https://link.springer.com/chapter/10.1007/978-3-540-40004-2_2
Mazet, O. (2002).
A characterization of Markov property for semigroups with invariant measure. Potential Analysis, 16(3), 279-287.
https://link.springer.com/article/10.1023/A:1014027914329
Mazet, O. (1998). Semigroupes de Markov associés à une famille de polynômes
orthogonaux (Doctoral dissertation).
Mazet, O. (1997). Classification des Semi-Groupes de diffusion sur IR associés
à une famille de polynômes orthogonaux. In Séminaire de Probabilités XXXI
(pp. 40-53). Springer Berlin Heidelberg. http://www.numdam.org/item/SPS_1997__31__40_0.pdf
Mazet,
O.
(1996). Une caractérisation des
générateurs de semi-groupes markoviens. Comptes rendus de l'Académie des
sciences. Série 1, Mathématique, 322(2), 165-168.