Senior CNRS researcher at IRIT (Institut de Recherche en Informatique de Toulouse, UMR 5505).
Team leader at the CBI (Centre de Biologie Intégrative, laboratory MCD, UMR 5077).
Associate member of IMT (Institut de Mathématiques de Toulouse, UMR 5219).
Sample navigation menu:
Home| CV|
Publications| Teaching| Students| Codes|?|?
Explore my GitHub account.
Sketchpose: learning to segment cells with partial annotations
(GitHub)
(Documentation)
Svetlana: Classify Your Segmentation Results
(GitHub)
(Documentation)
(Video)
Comparing OpenMP and CUDA on Matlab
Writing CUDA programs with Matlab. Comparisons for denoising.
(Toolbox on GitHub)
Structure Tensor-Based Analysis of Nuclei Organization
Structure tensor-based analysis of cells and nuclei organization in tissues.
W. Zhang, J. Fehrenbach, A. Desmaison, V. Lobjois, B. Ducommun, P. Weiss, submitted (2014).
(pdf)
(Matlab codes)
MRI - Gradient Waveform Design
http://chauffertn.free.fr/codes.html
CS - MRI with TSP:
http://chauffertn.free.fr/codes.html
VSNR:
These codes can be used for academic research. Please cite:
Variational algorithms to remove stationary noise. Application to microscopy imaging.
J. Fehrenbach, P. Weiss and C. Lorenzo, IEEE Image Processing Vol. 21, Issue 10, pages 4420 - 4430 (2012).
Fiji plugin (graphical version - Léo Mouly):
Fiji plugin (14M) -
Documentation -
Test images
Fiji plugin (non-graphical version - useful for macros - Benjamin Font):
Fiji plugin 2D -
Fiji plugin 3D -
Macro example 2D -
Macro example 3D -
Documentation
Fiji plugin (GPU version - Jean Eymerie):
Sources and executables on GitHub
Matlab code:
VSNR: Variational Stationary Noise Remover
Matlab code (CUDA):
Toolbox on GitHub
Python code:
Python toolbox developed by Patrick Quemere